PanGBank

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Welcome to PanGBank

A comprehensive database for pangenome analysis and exploration

Collections

Species

Pangenomes

Genomes

What is PanGBank?

PanGBank is a web-based platform for exploring, analyzing, and downloading pangenomes created with PPanGGOLiN.

PPanGGOLiN builds partitioned pangenome graphs from prokaryotic genomes and classifies gene families into persistent, shell, and cloud partitions. It predicts regions of genomic plasticity (RGPs) and their insertion spots. It also identifies conserved modules of genes that co-occur and are co-localized, gained or lost together in the variable regions of the pangenome.
CC BY-SA 4.0

PanGBank pangenome data is distributed under the CC BY-SA 4.0 license. See the About page for licensing details.

Features

Search & Explore

Search and explore pangenomes by taxonomy, genome, or strain name

Visualizations

Plot statistics at collection and pangenome levels, explore annotations with Proksee genome maps

Genome Analysis

Navigate from pangenomes to individual genomes and explore pangenome annotations at the genome level

Download

Download PPanGGOLiN pangenome files for your own analysis

Check our labgem/PanGBank-tutorial repository to see some use case examples.

Explore PanGBank

Collections

Browse a collection of pangenomes organized by taxonomy.

Pangenomes

Explore gene families, partitions, RGPs and pangenome visualizations.

Genomes

Inspect genome annotations and its relationship with the pangenome.