Page content description

This section describes the main pages of the PanGBank web interface and how to navigate between them.

Collections

The Collections page lists all pangenome collections available in PanGBank. Each row represents one collection release and shows: collection name, release version (latest badge marks the most recent), description, release date, taxonomy source, pangenome count, and genome count. Two additional links are available per row:

  • MultiQC report: opens the MultiQC report generated by the PanGBank construction workflow.
  • Release notes: opens a dialog with the changelog for that release.

PanGBank API

The PanGBank REST API allows you to access PanGBank data programmatically — search and retrieve collections, pangenomes and genomes. See PanGBank API documentation.

Full OpenAPI specification

Python SDK

A pure-Python SDK wraps the REST endpoints as typed Python functions.

PanGBank CLI

The PanGBank CLI allows you to access the pangenome data from the command line. It is basically a wrapper around the REST API.

pip install pangbank-cli